2011
- Robert Hoehndorf, Colin Batchelor, Thomas Bittner,
Michel Dumontier, Karen Eilbeck, Rob Knight, Christopher J. Mungall, Jane
S. Richardson, Jesse Stombaugh, Eric Westhof, Craig L. Zirbel and Neocles
B. Leontis, "The RNA Ontology (RNAO): An ontology for integrating RNA
sequence and structure data", Applied Ontology, 2011,
6, 53–89, doi:10.3233/AO-2011-0082.
- Christopher
J. Mungall, Colin Batchelor and Karen Eilbeck,
"Evolution of the Sequence Ontology terms and relationships", J.
Biomed. Inform., 2011, 44, 87–93, doi:10.1016/j.jbi.2010.03.002.
2010
- Martin G Reese, Barry Moore, Colin Batchelor, Fidel
Salas, Fiona Cunningham, Gabor T Marth, Lincoln Stein, Paul Flicek, Mark
Yandell and Karen Eilbeck, "A standard variation file format for human
genome sequences", Genome Biology, 2010, 11,
R88. doi:10.1186/gb-2010-11-8-r88.
- Colin Batchelor, Janna Hastings and Christoph
Steinbeck, "Ontological dependence, dispositions and institutional reality
in chemistry", Frontiers in Artificial Intelligence and
Applications, 2010, 209, 271–284, doi:10.3233/978-1-60750-535-8-271.
- Janna Hastings, Colin Batchelor, Christoph Steinbeck
and Stefan Schultz, "What are chemical structures and their relations?",
Frontiers in Artificial Intelligence and Applications, 2010,
209, 257–270, doi:10.3233/978-1-60750-535-8-257.
2009
- Simone Teufel, Advaith Siddharthan and Colin
Batchelor (2009),
"Towards Domain-Independent Argumentative Zoning: Evidence from Chemistry
and Computational Linguistics" in Proceedings of the 2009 Conference
on Empirical Methods in Natural Language Processing, Singapore,
August 2009, pp. 1493–1502, http://www.aclweb.org/anthology/D/D09/D09-1155
2008
- Peter Corbett, Colin Batchelor and Ann Copestake
(2008).
Pyridines, Pyridine and Pyridine Rings: Disambiguating Chemical Named
Entities.
Proceedings of Building and Evaluating Resources for Biomedical Text
Mining at LREC 2008, Marrakech, Morocco. [pdf]
- Colin Batchelor (2008). An Upper-Level Ontology for
Chemistry.
In 5th International Conference on Formal Ontology in Information
Systems,
Saarbrücken, Germany, 31st October to 3rd November 2008.
[pdf to follow]
2007
- Colin R. Batchelor and Peter T. Corbett (2007).
Semantic enrichment of
journal articles using chemical named entity recognition.
Proceedings of the 45th Annual Meeting of the Association for
Computational
Linguistics Companion Volume Proceedings of the Demo and
Poster Sessions, Prague, Czech Republic, pp. 45--48. [pdf]
- Peter Corbett, Colin Batchelor and Simone Teufel
(2007).
Annotation of chemical named entities.
BioNLP 2007: Biological, translational, and clinical language
processing,
Prague, Czech Republic, pp. 57--64. [pdf]